STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smug1Single-strand selective monofunctional uracil DNA glycosylase isoform X2. (280 aa)    
Predicted Functional Partners:
adat3
Probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1.
   
 0.945
tyms
Thymidylate synthase.
  
 
 0.818
neil1
Endonuclease VIII-like 1.
      
 0.784
uprt
Uracil phosphoribosyltransferase homolog.
   
 0.756
tk1
Thymidine kinase, cytosolic.
    
 0.739
apex1
DNA-(apurinic or apyrimidinic site) lyase.
   
 
 0.726
n6amt1
Release factor glutamine methyltransferase.
     
 0.632
oat
Ornithine aminotransferase, mitochondrial.
    
  0.618
mbd4
methyl-CpG binding domain 4, DNA glycosylase.
      
 0.612
nags
N-acetylglutamate synthase, mitochondrial.
    
  0.612
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.