STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104925872Serine/threonine-protein kinase SRPK3. (419 aa)    
Predicted Functional Partners:
cdc5l
Cell division cycle 5-like protein.
    
   0.710
u2af2
Splicing factor U2AF 65 kDa subunit isoform X1.
    
 
 0.604
LOC104933988
Splicing factor U2AF 65 kDa subunit.
    
 
 0.604
rbm39
RNA binding motif protein 39.
    
 
 0.595
LOC104936178
Serine/arginine-rich splicing factor 6.
   
 
 0.555
srsf5
Serine/arginine-rich splicing factor 5 isoform X1.
   
 
 0.547
LOC104926709
Splicing factor, arginine/serine-rich 4/5/6.
   
 
 0.547
ENSLCRP00005052235
Serine/arginine-rich splicing factor 4 isoform X1.
   
 
 0.547
ENSLCRP00005052248
annotation not available
   
 
 0.547
snrnp35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
    
 
 0.486
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.