STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109138476Interferon a3-like. (216 aa)    
Predicted Functional Partners:
irf3
Interferon regulatory factor 3.
     
 0.964
irf7
Interferon regulatory factor 7.
     
 0.956
LOC104932498
Uncharacterized protein LOC104932498.
     
 0.936
LOC109139382
Interferon alpha.
     
0.921
ifngr1l
Interferon gamma receptor 1-like precursor.
     
 0.919
LOC109141199
Putative transcription factor p65 homolog isoform X1.
     
 0.902
rsad2
Radical S-adenosyl methionine domain-containing protein 2.
      
 0.580
il10
Interleukin 10.
      
 0.570
irf1
Interferon regulatory factor 1.
      
 0.529
myd88
Myeloid differentiation primary response protein MyD88.
      
 0.512
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.