STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trnt1CCA tRNA nucleotidyltransferase 1, mitochondrial. (443 aa)    
Predicted Functional Partners:
hlcs
Biotin--protein ligase isoform X2.
  
  
 0.812
eprs1
Bifunctional glutamate/proline--tRNA ligase isoform X1.
  
  
 0.780
PNPT1
Polyribonucleotide nucleotidyltransferase 1, mitochondrial.
  
 0.773
yars1
Tyrosine--tRNA ligase, cytoplasmic.
  
 
 0.770
LOC104933098
Adipocyte plasma membrane-associated protein.
  
 0.769
apmap
Adipocyte plasma membrane associated protein.
  
 0.769
rexo2
Oligoribonuclease, mitochondrial.
     
 0.719
vps29
Vacuolar protein sorting-associated protein 29 isoform X1.
  
 
 0.703
atp5f1d
F-type H+-transporting ATPase subunit delta.
     
 0.703
tti1
TELO2-interacting protein 1 homolog.
    
 
 0.686
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.