STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104930978Protein DBF4 homolog A. (820 aa)    
Predicted Functional Partners:
cdc7
Cell division cycle 7-related protein kinase isoform X1.
   
 0.972
mcm4
DNA replication licensing factor MCM4.
   
 0.945
mcm5
DNA replication licensing factor MCM5.
   
 0.928
orc2
Origin recognition complex subunit 2.
   
 0.926
mcm3
DNA replication licensing factor MCM3.
   
 0.921
mcm7
DNA replication licensing factor MCM7.
   
 0.917
orc4
Origin recognition complex subunit 4.
    
 0.868
mcm10
Minichromosome maintenance protein 10.
   
 0.861
mcm2
DNA replication licensing factor MCM2.
   
 0.854
mcm6
DNA replication licensing factor MCM6.
   
 0.843
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.