STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl7Ubiquitin-like protein 7 isoform X1. (382 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.976
itsn2
Intersectin 2.
    
 0.952
LOC104920145
Intersectin-2.
    
 0.952
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.903
ubb
Polyubiquitin-B isoform X1.
    
 0.893
ubxn7
UBX domain-containing protein 7.
    
 0.876
LOC104919927
Ubiquitin-conjugating enzyme E2 variant 1-like isoform X2.
   
 0.871
LOC104935852
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.866
LOC104920976
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.866
LOC109141895
Next to BRCA1 gene 1 protein isoform X1.
   
 0.864
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.