STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf6E3 ubiquitin-protein ligase RNF6 isoform X1. (809 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.807
ubb
Polyubiquitin-B isoform X1.
    
 0.780
LOC104935852
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.718
LOC104920976
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.718
smad7
Mothers against decapentaplegic homolog 7.
   
 0.677
LOC104930524
Mothers against decapentaplegic homolog 6.
   
 0.677
smad6
Mothers against decapentaplegic homolog 6.
   
 0.677
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.661
mkln1
Muskelin isoform X2.
   
  
 0.582
ube2n
Ubiquitin-conjugating enzyme E2 N.
   
 0.567
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.