STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf152E3 ubiquitin-protein ligase RNF152. (214 aa)    
Predicted Functional Partners:
LOC109136711
Ras-related GTP-binding protein A/B.
    
 0.972
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.675
ubb
Polyubiquitin-B isoform X1.
    
  0.653
ube2n
Ubiquitin-conjugating enzyme E2 N.
   
  0.599
LOC104932591
Ubiquitin-conjugating enzyme E2 N isoform X2.
   
  0.599
dnajc11
DnaJ homolog subfamily C member 11.
      
 0.598
znf507
Zinc finger protein 507.
   
 0.585
fem1b
Protein fem-1 homolog B.
    
 0.582
LOC104928807
Kelch-like protein 22 isoform X1.
    
 
 0.582
LOC104937472
Protein transport protein SEC20.
      
 0.580
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.