STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104924948Spermatogenesis-associated protein 13 isoform X1. (1261 aa)    
Predicted Functional Partners:
rac2
Ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2).
    
 0.949
LOC104927171
Ras-related C3 botulinum toxin substrate 3.
    
 0.949
LOC104918805
Ras-related C3 botulinum toxin substrate 1.
    
 0.949
apc2
Adenomatous polyposis coli protein 2.
   
 0.948
LOC104937427
Adenomatosis polyposis coli protein.
   
 0.948
arhgef4
Rho guanine nucleotide exchange factor 4 isoform X4.
  
  
 
0.903
LOC104923623
Cell division control protein 42 homolog.
    
 0.713
CDC42
Cell division control protein 42 homolog.
    
 0.713
LOC104932543
Cell division control protein 42 homolog.
    
 0.585
LOC104935006
Cell division control protein 42 homolog.
    
 0.585
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.