STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104920107Syntaxin 1B/2/3. (280 aa)    
Predicted Functional Partners:
snap23
Synaptosomal-associated protein 23 isoform X1.
   
 0.911
LOC104928996
Vesicle-associated membrane protein 1.
    
 0.843
vamp3
Vesicle-associated membrane protein 3.
    
 0.843
vamp2
Vesicle-associated membrane protein 2.
    
 0.843
LOC104935004
Vesicle-associated membrane protein 2.
    
 0.843
ykt6
Synaptobrevin homolog YKT6.
    
 0.725
LOC104938599
Regulating synaptic membrane exocytosis protein 2.
   
 
 0.720
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.720
vamp7
Vesicle-associated membrane protein 7.
    
 0.717
LOC104926831
Vesicle-fusing ATPase isoform X1.
   
 0.683
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.