STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab18Ras-related protein Rab-18. (204 aa)    
Predicted Functional Partners:
rab3gap1
Rab3 GTPase-activating protein catalytic subunit isoform X1.
    
 0.807
rab3gap2
Rab3 GTPase-activating protein non-catalytic subunit isoform X3.
     
 0.798
LOC104936337
Rab proteins geranylgeranyltransferase component A 1.
     
 0.678
rabggtb
Geranylgeranyl transferase type-2 subunit beta.
     
 0.663
LOC104933312
Rab GDP dissociation inhibitor beta.
   
 0.636
LOC104923869
Rab GDP dissociation inhibitor alpha.
   
 0.636
LOC104923747
Rab GDP dissociation inhibitor beta.
   
 0.636
actr10
Actin-related protein 10.
   
 
 0.615
LOC104936322
Beta-centractin.
 
   
 0.601
dctn4
Dynactin subunit 4 isoform X1.
   
 
  0.597
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.