A0A4Q0A1B3 protein (Dimargaris cristalligena)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Q0A1B3

Fe-S_biosyn domain-containing protein. (101 aa)

Predicted Functional Partners:

A0A4P9ZW13

0.995

A0A4P9ZQX2

0.915

A0A4P9ZXU2

0.857

A0A4P9ZNG9

0.856

A0A4P9ZWT9

0.822

A0A4P9ZRJ1

0.788

A0A4P9ZWM7

0.766

A0A4P9ZRM4

0.734

A0A4P9ZMD4

0.719

A0A4Q0A0E9

0.719

Your Current Organism:

Dimargaris cristalligena

NCBI taxonomy Id: 215637
Other names: D. cristalligena

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9ZMD4	A0A4P9ZNG9	Pyridoxal phosphate-dependent transferase.	Thioredoxin.	0.515
A0A4P9ZMD4	A0A4P9ZQX2	Pyridoxal phosphate-dependent transferase.	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.989
A0A4P9ZMD4	A0A4P9ZRM4	Pyridoxal phosphate-dependent transferase.	Pyridoxal phosphate-dependent transferase.	0.765
A0A4P9ZMD4	A0A4P9ZW13	Pyridoxal phosphate-dependent transferase.	Fe-S_biosyn domain-containing protein.	0.719
A0A4P9ZMD4	A0A4P9ZWT9	Pyridoxal phosphate-dependent transferase.	HIRA-interacting protein 5.	0.902
A0A4P9ZMD4	A0A4P9ZXU2	Pyridoxal phosphate-dependent transferase.	Co-chaperone HscB, C-terminal oligomerization domain-containing protein.	0.713
A0A4P9ZMD4	A0A4Q0A1B3	Pyridoxal phosphate-dependent transferase.	Fe-S_biosyn domain-containing protein.	0.719
A0A4P9ZNG9	A0A4P9ZMD4	Thioredoxin.	Pyridoxal phosphate-dependent transferase.	0.515
A0A4P9ZNG9	A0A4P9ZQX2	Thioredoxin.	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.618
A0A4P9ZNG9	A0A4P9ZRJ1	Thioredoxin.	GCV_T domain-containing protein.	0.514
A0A4P9ZNG9	A0A4P9ZRM4	Thioredoxin.	Pyridoxal phosphate-dependent transferase.	0.585
A0A4P9ZNG9	A0A4P9ZW13	Thioredoxin.	Fe-S_biosyn domain-containing protein.	0.873
A0A4P9ZNG9	A0A4P9ZWT9	Thioredoxin.	HIRA-interacting protein 5.	0.700
A0A4P9ZNG9	A0A4P9ZXU2	Thioredoxin.	Co-chaperone HscB, C-terminal oligomerization domain-containing protein.	0.766
A0A4P9ZNG9	A0A4Q0A0E9	Thioredoxin.	Pyridoxal phosphate-dependent transferase.	0.515
A0A4P9ZNG9	A0A4Q0A1B3	Thioredoxin.	Fe-S_biosyn domain-containing protein.	0.856
A0A4P9ZQX2	A0A4P9ZMD4	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Pyridoxal phosphate-dependent transferase.	0.989
A0A4P9ZQX2	A0A4P9ZNG9	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Thioredoxin.	0.618
A0A4P9ZQX2	A0A4P9ZRJ1	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	GCV_T domain-containing protein.	0.516
A0A4P9ZQX2	A0A4P9ZRM4	Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Pyridoxal phosphate-dependent transferase.	0.999