A0A4V1J3X5 protein (Dimargaris cristalligena)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4V1J3X5

Uncharacterized protein. (205 aa)

Predicted Functional Partners:

A0A4P9ZKH0

0.810

A0A4P9ZMN1

0.694

A0A4Q0A237

0.660

A0A4V1J430

0.608

A0A4P9ZY27

0.589

A0A4P9ZZC6

0.578

A0A4P9ZSF6

0.567

A0A4Q0A2V7

0.567

A0A4P9ZLQ8

0.557

A0A4P9ZPL2

0.537

Your Current Organism:

Dimargaris cristalligena

NCBI taxonomy Id: 215637
Other names: D. cristalligena

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9ZKH0	A0A4V1J3X5	Beta-galactosidase.	Uncharacterized protein.	0.810
A0A4P9ZLQ8	A0A4P9ZY27	Uncharacterized protein.	RING-type domain-containing protein.	0.995
A0A4P9ZLQ8	A0A4Q0A237	Uncharacterized protein.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.984
A0A4P9ZLQ8	A0A4V1J3X5	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A4P9ZLQ8	A0A4V1J430	Uncharacterized protein.	PRKCSH domain-containing protein.	0.996
A0A4P9ZMN1	A0A4V1J3X5	Phosphatidylethanolamine-binding protein.	Uncharacterized protein.	0.694
A0A4P9ZPL2	A0A4Q0A237	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.576
A0A4P9ZPL2	A0A4V1J3X5	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	Uncharacterized protein.	0.537
A0A4P9ZSF6	A0A4V1J3X5	Aspartic peptidase domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.567
A0A4P9ZY27	A0A4P9ZLQ8	RING-type domain-containing protein.	Uncharacterized protein.	0.995
A0A4P9ZY27	A0A4Q0A237	RING-type domain-containing protein.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.986
A0A4P9ZY27	A0A4V1J3X5	RING-type domain-containing protein.	Uncharacterized protein.	0.589
A0A4P9ZY27	A0A4V1J430	RING-type domain-containing protein.	PRKCSH domain-containing protein.	0.988
A0A4P9ZZC6	A0A4V1J3X5	Aspartic peptidase domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.578
A0A4Q0A237	A0A4P9ZLQ8	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.984
A0A4Q0A237	A0A4P9ZPL2	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.	0.576
A0A4Q0A237	A0A4P9ZY27	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	RING-type domain-containing protein.	0.986
A0A4Q0A237	A0A4V1J3X5	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.660
A0A4Q0A237	A0A4V1J430	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	PRKCSH domain-containing protein.	0.988
A0A4Q0A2V7	A0A4V1J3X5	Aspartic peptidase domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.567