STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpACatalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (323 aa)    
Predicted Functional Partners:
degP
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family.
   
 0.880
glcD
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.877
katA
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
  
  
 
0.871
ilvI
Acetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.850
msrB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.820
KGL12791.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.815
ahpC
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.805
KGL13682.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.782
trxB
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.755
thiJ
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.711
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.