STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpE_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)    
Predicted Functional Partners:
trpD
Glutamine amidotransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 0.999
pabA
Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
KGL12875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.985
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
 0.972
pheA
Chloride transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
ilvE_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.891
aroE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.827
folP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.704
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
   
 0.618
KGL12323.1
3-dehydroquinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.618
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.