Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rfbDAmine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.959
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 0.952
galE_2
UDP-galactose-4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.784
KGL13636.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.781
strE
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.757
KGL13998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
KGL13855.1
Transformation system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.729
hemD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.727
argD_2
Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
    
 0.634
speE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.614
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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