Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KGL13748.1Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)    
Predicted Functional Partners:
ilvE_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.860
pheA
Chloride transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.859
KGL13216.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.849
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
 
  
 0.808
KGL13124.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.736
tpiA
Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.734
KGL12297.1
2-hydroxy-6-oxohepta-2,4-dienoate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.713
nnr
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.679
KGL13254.1
Prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
    
  0.653
KGL12789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.651
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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