STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acxAAcetone carboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)    
Predicted Functional Partners:
hyuB
Acetone carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
acxC
Acetone carboxylase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
KGL13830.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.922
gdh
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.509
KGL12367.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.493
KGL13124.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.489
KGL12368.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.488
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
 0.481
gltD_1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.404
KGL12599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.401
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.