Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGL13350.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (227 aa)    
Predicted Functional Partners:
KGL13348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.897
KGL13349.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.808
KGL13845.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.802
KGL12804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.784
hsdM
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.702
KGL13804.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.667
KGL13182.1
Fibronectin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.667
KGL14009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.658
KGL13252.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.658
KGL13351.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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