Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fldAFlavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. (163 aa)    
Predicted Functional Partners:
fliY_1
Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.652
KGL13429.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.602
metB_2
Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.599
cysK_2
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.599
KGL13512.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
KGL12876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.488
pheA
Chloride transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.478
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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