mdtI protein (Helicobacter muridarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mdtI

Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)

Predicted Functional Partners:

mdtJ

0.775

dcuA

0.625

flgG_1

0.457

KGL13029.1

0.453

nadE

0.413

viaA

0.406

Your Current Organism:

Helicobacter muridarum

NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGL13029.1	mdtI	LS73_05980	LS73_05985	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
KGL13029.1	nadE	LS73_05980	LS73_05975	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.	0.693
dcuA	mdtI	LS73_07415	LS73_05985	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
dcuA	mdtJ	LS73_07415	LS73_04140	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
dcuA	viaA	LS73_07415	LS73_04645	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
flgG_1	mdtI	LS73_01525	LS73_05985	Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
flgG_1	mdtJ	LS73_01525	LS73_04140	Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology.	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
mdtI	KGL13029.1	LS73_05985	LS73_05980	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
mdtI	dcuA	LS73_05985	LS73_07415	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
mdtI	flgG_1	LS73_05985	LS73_01525	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
mdtI	mdtJ	LS73_05985	LS73_04140	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
mdtI	nadE	LS73_05985	LS73_05975	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.	0.413
mdtI	viaA	LS73_05985	LS73_04645	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
mdtJ	dcuA	LS73_04140	LS73_07415	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
mdtJ	flgG_1	LS73_04140	LS73_01525	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
mdtJ	mdtI	LS73_04140	LS73_05985	SMR drug efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
nadE	KGL13029.1	LS73_05975	LS73_05980	NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
nadE	mdtI	LS73_05975	LS73_05985	NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
viaA	dcuA	LS73_04645	LS73_07415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
viaA	mdtI	LS73_04645	LS73_05985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About