STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGL12697.150S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
rpmC
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.
  
 0.997
KGL12695.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KGL12696.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
rplC
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
KGL12698.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
KGL12699.1
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
rpoBC
DNA-directed RNA polymerase subunit beta/beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.994
KGL12688.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KGL12690.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KGL12705.1
DNA-directed RNA polymerase subunit beta/beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.994
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.