Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccoSCytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)    
Predicted Functional Partners:
fmt
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
copA
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
fixQ
Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.409
KGL12756.1
Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.409
ccoO
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.400
KGL12724.1
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.400
Your Current Organism:
Helicobacter muridarum
NCBI taxonomy Id: 216
Other names: ATCC 49282, CCUG 29262, CIP 104248, DSM 22221, H. muridarum, LMG 13646, LMG:13646, NCTC 12714, strain ST1
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