STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS15891.1Globin; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
AIS15890.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
AIS15888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.904
AIS15889.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.709
lon
Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.508
AIS18790.1
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.422
AIS17388.1
Dihydropteridine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.
  
  
 0.412
AIS18308.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.
  
  
 0.412
Your Current Organism:
Pseudomonas rhizosphaerae
NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.