STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS16965.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
AIS16522.1
Scaffolding protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.866
AIS15936.1
Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.793
AIS18165.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.677
AIS16963.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.656
AIS16964.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.648
AIS16966.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
AIS17541.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.553
AIS18022.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.553
AIS16967.1
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.538
AIS16962.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
       0.517
Your Current Organism:
Pseudomonas rhizosphaerae
NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5
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