STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS19701.1Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)    
Predicted Functional Partners:
AIS19700.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.917
AIS16811.1
Cell envelope biogenesis protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.723
AIS19703.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.707
AIS16650.1
Peptide chain release factor RF-3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
AIS19599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
lolA
Membrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.614
AIS16987.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
AIS16782.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.572
AIS16412.1
Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
AIS16413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
Your Current Organism:
Pseudomonas rhizosphaerae
NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5
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