STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRM9_03664Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (63 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase/fumarate reductase flavoprotein subunit SdhA.
  
 0.892
mop1
Molybdenum-pterin binding protein Mop1.
  
    0.760
rps2p
Ribosomal protein S2P Rps2p; Belongs to the universal ribosomal protein uS2 family.
     
 0.645
gltA2
Glutamate synthase alpha subunit GltA2; Belongs to the glutamate synthase family.
  
 
 0.595
fwdD
Formylmethanofuran dehydrogenase subunit D FwdD.
 
 
 0.511
BRM9_2122
2-oxoacid ferredoxin oxidoreductase alpha subunit.
  
 
 0.506
fdhB
Formate dehydrogenase beta subunit FdhB; Catalyzes the oxidation of formate; Belongs to the FrhB family.
 
  
  0.503
acs
ADP-dependent acetyl-CoA synthetase Acs.
 
  
 0.501
trxB
Thioredoxin-disulfide reductase TrxB.
 
 
 0.499
rpoK
DNA-directed RNA polymerase subunit K RpoK; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
       0.483
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.