Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspEType II secretion system protein E GspE. (551 aa)    
Predicted Functional Partners:
gspF
Type II secretion system protein F GspF.
 
  
 0.980
gspF2
Type II secretion system protein F GspF2.
 
  
 0.954
BRM9_0679
Hypothetical protein.
     
 0.699
BRM9_0804
Hypothetical protein.
       0.672
BRM9_2305
Hypothetical protein.
 
     0.659
BRM9_1380
Type IV leader peptidase family protein.
 
   
 0.564
BRM9_1641
ATPase with chaperone activity.
 
     0.528
BRM9_0357
ATPase AAA family.
 
     0.516
BRM9_2089
Hypothetical protein.
     
 0.512
minD1
Cell division ATPase MinD1.
 
   
 0.441
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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