ef1b protein (Methanobacterium formicicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Methanobacterium formicicum

NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRM9_0807	ef1b	BRM9_0807	BRM9_0806	RNA-binding protein.	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	0.977
BRM9_0807	rpl13p	BRM9_0807	BRM9_0371	RNA-binding protein.	Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.963
BRM9_0807	rpl18e	BRM9_0807	BRM9_0372	RNA-binding protein.	Ribosomal protein L18e Rpl18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.871
BRM9_0807	rpl29	BRM9_0807	BRM9_0400	RNA-binding protein.	Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family.	0.979
BRM9_0807	rpl31e	BRM9_0807	BRM9_0705	RNA-binding protein.	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family.	0.894
BRM9_0807	rps19e	BRM9_0807	BRM9_0709	RNA-binding protein.	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.970
BRM9_0807	rps27e	BRM9_0807	BRM9_2260	RNA-binding protein.	Ribosomal protein S27e Rps27e.	0.972
BRM9_0807	rps3p	BRM9_0807	BRM9_0401	RNA-binding protein.	Ribosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.980
BRM9_0807	rps9p	BRM9_0807	BRM9_0370	RNA-binding protein.	Ribosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family.	0.963
ef1b	BRM9_0807	BRM9_0806	BRM9_0807	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	RNA-binding protein.	0.977
ef1b	rpl13p	BRM9_0806	BRM9_0371	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.981
ef1b	rpl18e	BRM9_0806	BRM9_0372	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L18e Rpl18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.970
ef1b	rpl29	BRM9_0806	BRM9_0400	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family.	0.967
ef1b	rpl31e	BRM9_0806	BRM9_0705	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family.	0.963
ef1b	rps19e	BRM9_0806	BRM9_0709	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.960
ef1b	rps27e	BRM9_0806	BRM9_2260	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S27e Rps27e.	0.962
ef1b	rps3p	BRM9_0806	BRM9_0401	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.972
ef1b	rps9p	BRM9_0806	BRM9_0370	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family.	0.981
ef1b	tuf	BRM9_0806	BRM9_2064	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Translation elongation factor aEF-1 alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.993
rpl13p	BRM9_0807	BRM9_0371	BRM9_0807	Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	RNA-binding protein.	0.963