BRM9_0807 protein (Methanobacterium formicicum)

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Score

BRM9_0807

RNA-binding protein. (53 aa)

Predicted Functional Partners:

rps9p

0.999

rpl13p

0.999

ef1b

0.980

rps3p

0.966

rps17e

0.960

rpl29

0.958

rpl22p

0.957

rpl40e

0.954

rps27e

0.954

rpl39e

0.952

Your Current Organism:

Methanobacterium formicicum

NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRM9_0807	ef1b	BRM9_0807	BRM9_0806	RNA-binding protein.	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	0.980
BRM9_0807	rpl13p	BRM9_0807	BRM9_0371	RNA-binding protein.	Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
BRM9_0807	rpl22p	BRM9_0807	BRM9_0402	RNA-binding protein.	Ribosomal protein L22P Rpl22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.957
BRM9_0807	rpl29	BRM9_0807	BRM9_0400	RNA-binding protein.	Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family.	0.958
BRM9_0807	rpl39e	BRM9_0807	BRM9_0706	RNA-binding protein.	Ribosomal protein L39e Rpl39e; Belongs to the eukaryotic ribosomal protein eL39 family.	0.952
BRM9_0807	rpl40e	BRM9_0807	BRM9_1834	RNA-binding protein.	Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.954
BRM9_0807	rps17e	BRM9_0807	BRM9_1464	RNA-binding protein.	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.960
BRM9_0807	rps27e	BRM9_0807	BRM9_2260	RNA-binding protein.	Ribosomal protein S27e Rps27e.	0.954
BRM9_0807	rps3p	BRM9_0807	BRM9_0401	RNA-binding protein.	Ribosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.966
BRM9_0807	rps9p	BRM9_0807	BRM9_0370	RNA-binding protein.	Ribosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family.	0.999
ef1b	BRM9_0807	BRM9_0806	BRM9_0807	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	RNA-binding protein.	0.980
ef1b	rpl13p	BRM9_0806	BRM9_0371	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.993
ef1b	rpl22p	BRM9_0806	BRM9_0402	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L22P Rpl22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.975
ef1b	rpl29	BRM9_0806	BRM9_0400	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family.	0.985
ef1b	rpl39e	BRM9_0806	BRM9_0706	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L39e Rpl39e; Belongs to the eukaryotic ribosomal protein eL39 family.	0.824
ef1b	rpl40e	BRM9_0806	BRM9_1834	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.961
ef1b	rps17e	BRM9_0806	BRM9_1464	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.969
ef1b	rps27e	BRM9_0806	BRM9_2260	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S27e Rps27e.	0.967
ef1b	rps3p	BRM9_0806	BRM9_0401	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.995
ef1b	rps9p	BRM9_0806	BRM9_0370	Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Ribosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family.	0.993