STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRM9_1237Histidine kinase/PAS domain-containing protein. (769 aa)    
Predicted Functional Partners:
BRM9_1036
Histidine kinase/PAS domain-containing protein.
 
  
 
0.855
BRM9_1404
Two component sytem histidine kinase.
 
  
 
0.839
BRM9_1035
Response regulator domain-containing protein.
  
  0.774
BRM9_1234
Response regulator domain-containing protein.
 
  
  0.772
BRM9_0976
Response regulator domain-containing protein.
 
  
  0.757
BRM9_1405
Two component system response regulator.
 
  
  0.746
BRM9_1233
Response regulator/PAS domain-containing protein.
  
  0.727
BRM9_1034
Response regulator/PAS domain-containing protein.
     0.720
BRM9_1236
Hypothetical protein.
       0.432
BRM9_0743
Cache domain-containing protein.
 
  
  0.427
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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