STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRM9_2000ABC transporter ATP-binding protein. (250 aa)    
Predicted Functional Partners:
BRM9_1999
ABC transporter permease protein.
  
 0.975
BRM9_0072
ABC transporter permease protein.
  
 0.841
BRM9_2218
ABC transporter permease protein.
  
 0.834
BRM9_0855
ABC transporter permease protein.
 
  
 0.813
BRM9_0495
ABC transporter permease protein.
 
  
 0.800
BRM9_1744
MatE efflux family protein.
  
  
 0.534
BRM9_2054
MatE efflux family protein.
  
  
 0.534
BRM9_2001
TrmB family transcriptional regulator.
     
 0.524
BRM9_1456
ABC transporter permease protein.
 
  
 0.485
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.