Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BRM9_2001TrmB family transcriptional regulator. (270 aa)    
Predicted Functional Partners:
comE
Sulfopyruvate decarboxylase subunit beta ComE.
  
    0.643
comD
Sulfopyruvate decarboxylase subunit alpha ComD.
  
    0.643
comA
Phosphosulfolactate synthase ComA.
   
    0.543
BRM9_0182
TrmB family transcriptional regulator.
  
     0.538
BRM9_2000
ABC transporter ATP-binding protein.
     
 0.524
BRM9_1999
ABC transporter permease protein.
       0.516
BRM9_2002
Cell wall biosynthesis protein UDP-glycosyltransferase family.
       0.474
BRM9_2323
ArsR family transcriptional regulator.
 
   
 0.452
BRM9_1928
Hypothetical protein; Involved in DNA damage repair.
  
     0.432
BRM9_2113
ArsR family transcriptional regulator.
 
   
 0.427
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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