STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRM9_2002Cell wall biosynthesis protein UDP-glycosyltransferase family. (349 aa)    
Predicted Functional Partners:
BRM9_1997
Cell wall biosynthesis protein.
 
     0.879
BRM9_1115
Hypothetical protein.
  
     0.741
BRM9_2296
Replication factor A.
  
     0.723
phoU2
Phosphate uptake regulator PhoU2.
  
     0.684
BRM9_1514
Adhesin-like protein with transglutaminase and PMBR domains.
  
     0.677
BRM9_0715
Oligosaccharyl transferase.
  
     0.664
BRM9_2087
Sortase family protein.
  
     0.655
BRM9_1242
Metallophosphoesterase.
 
     0.645
BRM9_0441
Hypothetical protein.
  
     0.638
BRM9_0551
Hypothetical protein.
  
     0.636
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.