Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRM9_2016Hypothetical protein. (278 aa)    
Predicted Functional Partners:
BRM9_2017
MarR family transcriptional regulator.
 
     0.912
BRM9_2018
Flavodoxin.
 
     0.872
BRM9_2212
Flavodoxin.
 
     0.568
copB
Copper-translocating P-type ATPase.
       0.520
pgsA2
Phosphatidylglycerophosphate synthase PgsA2; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.512
BRM9_0182
TrmB family transcriptional regulator.
 
     0.492
BRM9_2021
Transcriptional regulator effector-binding domain protein.
 
     0.429
Your Current Organism:
Methanobacterium formicicum
NCBI taxonomy Id: 2162
Other names: ATCC 33274, JCM 10132, M. formicicum, Methanobacterium sp. BRM9, NBRC 100475, OCM 55, strain MF
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