Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAP87424.1 | EAP87425.1 | CA2559_01675 | CA2559_01680 | Hypothetical protein. | Hypothetical protein. | 0.821 |
EAP87424.1 | EAP87426.1 | CA2559_01675 | CA2559_01685 | Hypothetical protein. | Sensor histidine kinase. | 0.620 |
EAP87424.1 | EAP88012.1 | CA2559_01675 | CA2559_04615 | Hypothetical protein. | Putative DNA polymerase III alpha subunit. | 0.909 |
EAP87424.1 | rplK | CA2559_01675 | CA2559_00045 | Hypothetical protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.593 |
EAP87424.1 | rplU | CA2559_01675 | CA2559_02720 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.598 |
EAP87424.1 | rpsB | CA2559_01675 | CA2559_04075 | Hypothetical protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.599 |
EAP87424.1 | rpsF | CA2559_01675 | CA2559_09978 | Hypothetical protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.667 |
EAP87424.1 | rpsG | CA2559_01675 | CA2559_05700 | Hypothetical protein. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.599 |
EAP87424.1 | rpsJ | CA2559_01675 | CA2559_05710 | Hypothetical protein. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.628 |
EAP87424.1 | topA | CA2559_01675 | CA2559_00715 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.675 |
EAP87425.1 | EAP87424.1 | CA2559_01680 | CA2559_01675 | Hypothetical protein. | Hypothetical protein. | 0.821 |
EAP87425.1 | EAP87426.1 | CA2559_01680 | CA2559_01685 | Hypothetical protein. | Sensor histidine kinase. | 0.617 |
EAP87426.1 | EAP87424.1 | CA2559_01685 | CA2559_01675 | Sensor histidine kinase. | Hypothetical protein. | 0.620 |
EAP87426.1 | EAP87425.1 | CA2559_01685 | CA2559_01680 | Sensor histidine kinase. | Hypothetical protein. | 0.617 |
EAP88012.1 | EAP87424.1 | CA2559_04615 | CA2559_01675 | Putative DNA polymerase III alpha subunit. | Hypothetical protein. | 0.909 |
EAP88012.1 | topA | CA2559_04615 | CA2559_00715 | Putative DNA polymerase III alpha subunit. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.759 |
rplK | EAP87424.1 | CA2559_00045 | CA2559_01675 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Hypothetical protein. | 0.593 |
rplK | rplU | CA2559_00045 | CA2559_02720 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplK | rpsB | CA2559_00045 | CA2559_04075 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplK | rpsF | CA2559_00045 | CA2559_09978 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
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