STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrDDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (339 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 0.989
EAP85968.1
Dihydroorotase.
 
 0.977
EAP87416.1
Dihydroorotase.
  
 0.973
EAP86923.1
Carbamoyl-phosphate synthase, large (or ammonia) subunit (carB).
 
 
 0.922
pyrB
Probable aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
  
 0.912
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
 
  
 0.908
EAP87079.1
Orotidine 5'-phosphate decarboxylase.
  
  
 0.895
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.846
EAP86049.1
Hypothetical protein.
       0.808
EAP86050.1
hydroxymethylglutaryl-CoA lyase-like protein.
     
 0.713
Your Current Organism:
Croceibacter atlanticus
NCBI taxonomy Id: 216432
Other names: C. atlanticus HTCC2559, Croceibacter atlanticus HTCC2559, Croceibacter atlanticus str. HTCC2559, Croceibacter atlanticus strain HTCC2559
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