Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylAXylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (449 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
KJW12512.1
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.927
KJW13510.1
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.909
KJW12796.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.903
KJW12797.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.903
KJW13786.1
XylR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
KJW13362.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.854
KJW11804.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.853
KJW12974.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.833
KJW11690.1
Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
  
 
 0.821
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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