STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJW13366.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
KJW12414.1
Glycosyl hydrolase family 25; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
KJW13196.1
Extracellular protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
KJW12640.1
NRPS condensation (elongation) domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
KJW13310.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.524
KJW12413.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
KJW13834.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
KJW13709.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.448
KJW12650.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
KJW13258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SecY/SEC61-alpha family.
   
   0.433
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
   0.433
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.