Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJW13526.1PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
KJW13634.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.996
KJW12710.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.899
KJW12396.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.898
KJW12351.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.896
KJW13101.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.872
KJW11625.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.869
KJW13953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.853
KJW12609.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.852
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.702
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.693
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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