Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJW12352.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)    
Predicted Functional Partners:
KJW12351.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KJW12662.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.976
KJW12396.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.898
KJW13101.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.861
KJW13953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.833
KJW13634.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
KJW12710.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.752
KJW11625.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.750
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.702
KJW12609.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.693
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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