Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJW12609.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)    
Predicted Functional Partners:
KJW12610.1
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
KJW13100.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.947
KJW12709.1
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.943
KJW11624.1
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.924
KJW12663.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.910
KJW12608.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.884
KJW13526.1
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.852
KJW13954.1
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.752
KJW12646.1
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.733
KJW12352.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.693
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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