Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KJW12246.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)    
Predicted Functional Partners:
KJW13095.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.931
KJW12313.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.906
KJW11979.1
Competence protein ComGA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
KJW12245.1
Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.891
cinA
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
     
 0.887
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.859
KJW12247.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.828
KJW11980.1
Competence protein ComGC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.821
KJW12007.1
Type II secretory pathway/competence component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.799
KJW11843.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.727
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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