STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJW12045.1DNA repair ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (878 aa)    
Predicted Functional Partners:
KJW12044.1
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
KJW12046.1
3'-5' exonuclease; Catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.823
KJW12043.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0342 family.
 
     0.758
KJW13727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.603
KJW13908.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
KJW12042.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
KJW13728.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.514
KJW13918.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
KJW13543.1
Replication initiation/membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
KJW11954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0473 family.
  
     0.481
Your Current Organism:
Lactobacillus spicheri
NCBI taxonomy Id: 216463
Other names: DSM 15429, JCM 15956, L. spicheri, LMG 21871, LMG:21871, LTH 5753, Lactobacillus spicheri Meroth et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.