Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MMAR_01004-hydroxybenzoate synthetase (chorismate lyase). (199 aa)    
Predicted Functional Partners:
MMAR_0099
Non-ribosomal peptide synthetase; Function unknown but the gene encodes a Nrp of three functional domains with the predicted sequential condensation of the amino acids threonine, threonine and alanine. the second domain contains an epimerization domain and the third domains contains a terminal te.
     
 0.639
MMAR_0098
Polyketide synthase possibly involved in lipid synthesis.
  
    0.635
wbbL2
Rhamnosyl transferase WbbL2; Possibly involved in cell wall arabinogalactan linker formation: uses dTDP-L-rhamnose as substrate to insert the rhamnosyl residue into the cell wall.
  
     0.620
MMAR_1639
PPE family protein.
  
     0.594
MMAR_0101
Polyketide synthase PKS; Function unknown but contains a single extension module with domain structure (KS, Ata, DH, KR, ACP).
 
  
 0.593
MMAR_4621
PPE family protein.
  
     0.589
MMAR_0642
PPE family protein.
  
     0.587
MMAR_4995
PE-PGRS family protein.
  
     0.579
MMAR_0641
PPE family protein.
  
     0.578
MMAR_2100
PE-PGRS family protein.
  
     0.578
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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