Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_0484Conserved hypothetical transmembrane protein. (204 aa)    
Predicted Functional Partners:
MMAR_0738
Two-component sensor and regulator.
   
 
 0.456
MMAR_0483
Conserved hypothetical alanine rich protein.
       0.449
MMAR_5186
Sensor-component of a two-component regulator.
   
 
 0.447
MMAR_0481
Conserved hypothetical protein.
       0.426
MMAR_3476
Conserved hypothetical protein.
  
    0.423
MMAR_0482
Conserved hypothetical protein.
      
0.409
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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