Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_0761PPE family protein, PPE10. (488 aa)    
Predicted Functional Partners:
MMAR_0760
Conserved hypothetical protein.
 
   
 0.835
MMAR_2458
PE-PGRS family protein.
  
     0.772
MMAR_4995
PE-PGRS family protein.
  
     0.770
MMAR_2100
PE-PGRS family protein.
  
   
 0.769
MMAR_2695
PE-PGRS family protein, PE_PGRS9_1.
  
     0.769
MMAR_4489
Conserved hypothetical membrane protein.
  
     0.769
MMAR_0943
PE-PGRS family protein.
  
     0.768
MMAR_0989
PE-PGRS family protein.
  
     0.767
MMAR_3316
PE-PGRS family protein.
  
   
 0.767
MMAR_5439
Conserved hypothetical transmembrane protein.
  
     0.767
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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