Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lprQConserved lipoprotein LprQ. (462 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylenolpyruvoylglucosamine reductase MurB; Cell wall formation.
     
 0.899
MMAR_0807
Conserved hypothetical protein.
 
     0.766
MMAR_1692
Conserved hypothetical protein.
  
     0.634
MMAR_4066
Conserved hypothetical protein.
 
     0.602
MMAR_4524
Conserved hypothetical membrane protein.
  
     0.565
MMAR_1313
Conserved hypothetical protein.
  
     0.532
MMAR_4518
Conserved hypothetical transmembrane protein.
  
     0.509
MMAR_0805
Amidohydrolase; Function unknown, hydrolytic enzyme probably involved in cellular metabolism.
  
    0.506
sseC2
Sulphur metabolism protein, SseC2.
  
     0.506
MMAR_1215
Conserved protein.
  
     0.490
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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