Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MMAR_1973Conserved protein; Function unknown but contains a lima, limonene-1,2- epoxide hydrolase domain. (146 aa)    
Predicted Functional Partners:
MMAR_2824
Monooxygenase.
     
 0.912
MMAR_5115
Monooxygenase.
     
 0.912
MMAR_1974
Glycosyl transferase; Function unknown, probably involved in cellular metabolism.
       0.749
MMAR_1975
Conserved hypothetical protein.
       0.725
MMAR_5369
Conserved transmembrane protein.
  
     0.527
MMAR_0144
Conserved hypothetical membrane protein.
       0.500
MMAR_2774
Oxidoreductase; Function unknown, probably involved in cellular metabolism.
  
   
 0.483
MMAR_0153
Conserved hypothetical protein.
 
     0.475
MMAR_2478
Long-chain acyl-CoA synthase; Function unknown, but possibly involved in lipid degradation.
  
     0.461
MMAR_0699
Conserved hypothetical membrane protein.
  
     0.433
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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