Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_2015Conserved protein. (100 aa)    
Predicted Functional Partners:
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.773
MMAR_2707
Conserved regulatory protein; Function unknown but contains MerR helix-turn-helix transcription regulatory domain.
  
     0.771
whiA
Transcriptional regulatory protein WhiA; Involved in cell division and chromosome segregation.
  
     0.768
MMAR_3332
Conserved protein.
  
     0.758
MMAR_3347
Conserved hypothetical protein.
 
     0.754
MMAR_1981
Conserved protein.
  
     0.747
MMAR_1970
Transcriptional regulatory protein; Possibly involved in transcriptional mechanism.
  
     0.732
MMAR_3250
Conserved transmembrane protein.
  
     0.732
MMAR_1369
Conserved hypothetical protein.
  
     0.731
rpoZ
DNA-directed RNA polymerase (omega chain) RpoZ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.730
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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